eval_time = Inf
are now not always set to 0 and confidence intervals at infinite evaluation times are now not always set to NA
. This applies to proportional_hazards()
and bag_tree()
models as well as models with the partykit
engine, decision_tree()
and rand_forest()
(#320).predict()
methods for flexsurv models, in preparation for the upcoming flexsurv release (#317).multi_predict()
is now available for all prediction types for proportional_hazards()
models with the "glmnet"
engine, so newly also for type = "time"
and type = "raw"
(#277, #282).
Random forests with the "aorsf"
engine can now predict survival time, i.e., predict(type = "time")
is now available (#308).
survival_prob_*()
, survival_time_*()
, and hazard_*()
helper functions now all take a parsnip model_fit
object as the main input, instead of an engine fit as was the case for some of them previously (#302).extract_fit_engine()
now works properly for proportional hazards models fitted with the "glmnet"
engine (#266).
multi_predict(type = "survival")
for proportional_hazards(engine = "glmnet")
models: when used with a single penalty
value, this value is now included in the results. It was previously omitted (#267, #282).
proportional_hazards(engine = "glmnet")
models now don't pretend to be able to deal with sparse matrices when they are not (#291).
Fixed a bug for proportional_hazards(engine = "glmnet")
where prediction didn't work for a workflow()
with a formula as the preprocessor (#264).
survival_time_coxnet()
and survival_prob_coxnet()
gain a multi
argument to allow multiple values for penalty
(#278, #279).The new eval_time
argument replaces the time
argument for the time points at which to predict survival probability and hazard. The time
argument has been deprecated (#244).
The matrix interface for fitting, fit_xy()
, now works for censored regression models (#225, #234, #247, #251).
Improved error messages throughout the package (#248).
Added the new "aorsf"
engine for rand_forest()
for accelerated oblique random survival forests with the aorsf package (@bcjaeger, #211).
Added the new flexsurvspline
engine for survival_reg()
(@mattwarkentin, #213).
Predictions of type "linear_pred"
for survival_reg(engine = "flexsurv")
are now on the correct scale for distributions where the natural scale and the unrestricted scale of the location parameter are identical, e.g. dist = "lnorm"
(#229).
Predictions of type "linear_pred"
for proportional_hazards(engine = "glmnet")
via multi_predict()
now have the same sign as those via predict()
(#242).
Predictions of survival probability for survival_reg(engine = "flexsurv")
for a single time point are now nested correctly (#254).
Predictions of survival probability for decision_tree(engine = "rpart")
for a single observation now work (#256).
Predictions of type "quantile"
for survival_reg(engine = "survival")
for a single observation now work (#257).
Fixed a bug for printing coxnet
models, i.e., proportional_hazards()
models fitted with the "glmnet"
engine (#249).
Predictions of survival probabilities are now calculated via summary.survfit()
for proportional_hazards()
models with the "survival"
and "glmnet"
engines, bag_tree()
models with the "rpart"
engine, decision_tree()
models with the "partykit"
engines, as well as rand_forest()
models with the "partykit"
engine (#221, #224).
Added internal survfit_summary_*()
helper functions (#216).
For boosted trees with the "mboost"
engine, survival probabilities can now be predicted for time = -Inf
. This is always 1. For time = Inf
this now predicts a survival probability of 0 (#215).
Updated tests on model arguments and update()
methods (#208).
Internal re-organisation of code (#206, 209).
Added a NEWS.md
file to track changes to the package.